Figure 194. Abundance. Data grouped by Sample.type,visit. bar_stacked plot. Image file: 
plots/323100ecb64.svg. 
noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018
Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.
The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.
(1.1.1.4.3.2.2.2.1.1.0) Table 62. Data table used for plots. Data grouped by Sample.type,visit. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.1.1.4.3.2.2.2.1.1.0-3234afa226c.1.1.1.4.3.2.2.2.1.1.csv
| .record.id | Sample.type | visit | feature | Abundance |
|---|---|---|---|---|
| SM1 | patient | 1 | Bacteroides.Otu0001 | 3.325e-02 |
| SM10 | patient | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM100 | patient | 4 | Bacteroides.Otu0001 | 7.692e-05 |
| SM11 | patient | 2 | Bacteroides.Otu0001 | 2.280e-01 |
| SM12 | patient | 1 | Bacteroides.Otu0001 | 2.363e-01 |
| SM13 | patient | 1 | Bacteroides.Otu0001 | 2.143e-02 |
| SM14 | patient | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM15 | control | 1 | Bacteroides.Otu0001 | 3.935e-02 |
| SM16 | patient | 4 | Bacteroides.Otu0001 | 3.835e-02 |
| SM17 | patient | 1 | Bacteroides.Otu0001 | 1.738e-01 |
| SM18 | patient | 2 | Bacteroides.Otu0001 | 1.343e-03 |
| SM19 | patient | 2 | Bacteroides.Otu0001 | 3.656e-02 |
| SM2 | patient | 1 | Bacteroides.Otu0001 | 7.129e-03 |
| SM20 | control | 1 | Bacteroides.Otu0001 | 5.936e-02 |
| SM21 | patient | 1 | Bacteroides.Otu0001 | 9.063e-02 |
| SM22 | patient | 1 | Bacteroides.Otu0001 | 1.800e-01 |
| SM23 | patient | 2 | Bacteroides.Otu0001 | 2.207e-01 |
| SM24 | patient | 1 | Bacteroides.Otu0001 | 6.084e-02 |
| SM25 | patient | 4 | Bacteroides.Otu0001 | 0.000e+00 |
| SM26 | control | 1 | Bacteroides.Otu0001 | 5.819e-02 |
| SM28 | control | 1 | Bacteroides.Otu0001 | 1.415e-01 |
| SM29 | patient | 3 | Bacteroides.Otu0001 | 1.015e-01 |
| SM3 | patient | 2 | Bacteroides.Otu0001 | 5.679e-02 |
| SM30 | patient | 4 | Bacteroides.Otu0001 | 4.615e-02 |
| SM31 | control | 2 | Bacteroides.Otu0001 | 3.883e-02 |
| SM33 | patient | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM35 | control | 1 | Bacteroides.Otu0001 | 1.546e-02 |
| SM36 | patient | 4 | Bacteroides.Otu0001 | 0.000e+00 |
| SM37 | control | 1 | Bacteroides.Otu0001 | 8.035e-02 |
| SM38 | patient | 2 | Bacteroides.Otu0001 | 2.849e-01 |
| SM39 | patient | 1 | Bacteroides.Otu0001 | 1.512e-01 |
| SM40 | patient | 4 | Bacteroides.Otu0001 | 1.767e-02 |
| SM41 | patient | 1 | Bacteroides.Otu0001 | 4.380e-02 |
| SM42 | patient | 4 | Bacteroides.Otu0001 | 2.641e-01 |
| SM43 | patient | 4 | Bacteroides.Otu0001 | 1.241e-01 |
| SM44 | control | 1 | Bacteroides.Otu0001 | 5.478e-04 |
| SM45 | patient | 2 | Bacteroides.Otu0001 | 0.000e+00 |
| SM48 | control | 1 | Bacteroides.Otu0001 | 6.268e-02 |
| SM49 | patient | 1 | Bacteroides.Otu0001 | 1.179e-01 |
| SM5 | patient | 3 | Bacteroides.Otu0001 | 2.741e-01 |
| SM50 | patient | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM51 | patient | 4 | Bacteroides.Otu0001 | 2.826e-01 |
| SM52 | patient | 1 | Bacteroides.Otu0001 | 5.829e-02 |
| SM53 | patient | 2 | Bacteroides.Otu0001 | 2.368e-01 |
| SM54 | patient | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM55 | control | 1 | Bacteroides.Otu0001 | 2.798e-02 |
| SM56 | patient | 2 | Bacteroides.Otu0001 | 0.000e+00 |
| SM57 | patient | 1 | Bacteroides.Otu0001 | 1.037e-01 |
| SM58 | patient | 2 | Bacteroides.Otu0001 | 1.620e-04 |
| SM59 | patient | 3 | Bacteroides.Otu0001 | 3.745e-03 |
| SM60 | patient | 3 | Bacteroides.Otu0001 | 2.447e-01 |
| SM62 | patient | 1 | Bacteroides.Otu0001 | 5.347e-01 |
| SM63 | control | 1 | Bacteroides.Otu0001 | 8.649e-02 |
| SM64 | patient | 2 | Bacteroides.Otu0001 | 3.508e-01 |
| SM65 | patient | 3 | Bacteroides.Otu0001 | 8.092e-02 |
| SM66 | control | 1 | Bacteroides.Otu0001 | 1.585e-01 |
| SM67 | patient | 4 | Bacteroides.Otu0001 | 2.186e-01 |
| SM68 | patient | 4 | Bacteroides.Otu0001 | 0.000e+00 |
| SM69 | patient | 4 | Bacteroides.Otu0001 | 1.655e-01 |
| SM7 | control | 1 | Bacteroides.Otu0001 | 4.313e-02 |
| SM70 | control | 1 | Bacteroides.Otu0001 | 1.567e-02 |
| SM71 | patient | 3 | Bacteroides.Otu0001 | 2.788e-01 |
| SM72 | control | 1 | Bacteroides.Otu0001 | 1.323e-03 |
| SM73 | patient | 1 | Bacteroides.Otu0001 | 1.891e-01 |
| SM74 | control | 2 | Bacteroides.Otu0001 | 5.565e-02 |
| SM75 | patient | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM76 | control | 1 | Bacteroides.Otu0001 | 2.751e-02 |
| SM77 | patient | 2 | Bacteroides.Otu0001 | 2.034e-01 |
| SM79 | patient | 2 | Bacteroides.Otu0001 | 2.642e-02 |
| SM8 | patient | 1 | Bacteroides.Otu0001 | 5.265e-02 |
| SM81 | control | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM82 | patient | 4 | Bacteroides.Otu0001 | 1.052e-02 |
| SM83 | patient | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM84 | patient | 1 | Bacteroides.Otu0001 | 1.247e-01 |
| SM86 | patient | 2 | Bacteroides.Otu0001 | 0.000e+00 |
| SM87 | patient | 1 | Bacteroides.Otu0001 | 1.941e-01 |
| SM88 | patient | 2 | Bacteroides.Otu0001 | 2.302e-02 |
| SM89 | control | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM9 | patient | 2 | Bacteroides.Otu0001 | 3.497e-02 |
| SM90 | patient | 2 | Bacteroides.Otu0001 | 3.713e-02 |
| SM91 | patient | 3 | Bacteroides.Otu0001 | 1.254e-01 |
| SM92 | patient | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM93 | patient | 1 | Bacteroides.Otu0001 | 3.120e-01 |
| SM95 | control | 1 | Bacteroides.Otu0001 | 1.492e-01 |
| SM96 | patient | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM98 | patient | 3 | Bacteroides.Otu0001 | 3.648e-02 |
| SM99 | patient | 3 | Bacteroides.Otu0001 | 4.305e-02 |
| SM1 | patient | 1 | Bacteroides.Otu2520 | 1.003e-01 |
| SM10 | patient | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM100 | patient | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM11 | patient | 2 | Bacteroides.Otu2520 | 1.344e-01 |
| SM12 | patient | 1 | Bacteroides.Otu2520 | 1.504e-01 |
| SM13 | patient | 1 | Bacteroides.Otu2520 | 1.473e-02 |
| SM14 | patient | 1 | Bacteroides.Otu2520 | 3.786e-04 |
| SM15 | control | 1 | Bacteroides.Otu2520 | 1.756e-01 |
| SM16 | patient | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM17 | patient | 1 | Bacteroides.Otu2520 | 1.862e-02 |
| SM18 | patient | 2 | Bacteroides.Otu2520 | 1.074e-02 |
| SM19 | patient | 2 | Bacteroides.Otu2520 | 9.255e-04 |
| SM2 | patient | 1 | Bacteroides.Otu2520 | 1.638e-01 |
| SM20 | control | 1 | Bacteroides.Otu2520 | 2.417e-01 |
| SM21 | patient | 1 | Bacteroides.Otu2520 | 4.540e-03 |
| SM22 | patient | 1 | Bacteroides.Otu2520 | 2.610e-02 |
| SM23 | patient | 2 | Bacteroides.Otu2520 | 0.000e+00 |
| SM24 | patient | 1 | Bacteroides.Otu2520 | 5.531e-03 |
| SM25 | patient | 4 | Bacteroides.Otu2520 | 3.053e-01 |
| SM26 | control | 1 | Bacteroides.Otu2520 | 4.378e-02 |
| SM28 | control | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM29 | patient | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM3 | patient | 2 | Bacteroides.Otu2520 | 5.657e-04 |
| SM30 | patient | 4 | Bacteroides.Otu2520 | 3.250e-04 |
| SM31 | control | 2 | Bacteroides.Otu2520 | 1.173e-02 |
| SM33 | patient | 1 | Bacteroides.Otu2520 | 7.120e-02 |
| SM35 | control | 1 | Bacteroides.Otu2520 | 1.330e-01 |
| SM36 | patient | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM37 | control | 1 | Bacteroides.Otu2520 | 3.158e-02 |
| SM38 | patient | 2 | Bacteroides.Otu2520 | 9.696e-02 |
| SM39 | patient | 1 | Bacteroides.Otu2520 | 8.620e-03 |
| SM40 | patient | 4 | Bacteroides.Otu2520 | 5.920e-02 |
| SM41 | patient | 1 | Bacteroides.Otu2520 | 1.440e-01 |
| SM42 | patient | 4 | Bacteroides.Otu2520 | 1.665e-04 |
| SM43 | patient | 4 | Bacteroides.Otu2520 | 3.957e-02 |
| SM44 | control | 1 | Bacteroides.Otu2520 | 1.369e-03 |
| SM45 | patient | 2 | Bacteroides.Otu2520 | 0.000e+00 |
| SM48 | control | 1 | Bacteroides.Otu2520 | 1.951e-02 |
| SM49 | patient | 1 | Bacteroides.Otu2520 | 1.715e-01 |
| SM5 | patient | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM50 | patient | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM51 | patient | 4 | Bacteroides.Otu2520 | 3.368e-02 |
| SM52 | patient | 1 | Bacteroides.Otu2520 | 2.179e-04 |
| SM53 | patient | 2 | Bacteroides.Otu2520 | 7.192e-05 |
| SM54 | patient | 3 | Bacteroides.Otu2520 | 2.426e-01 |
| SM55 | control | 1 | Bacteroides.Otu2520 | 1.289e-03 |
| SM56 | patient | 2 | Bacteroides.Otu2520 | 9.465e-03 |
| SM57 | patient | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM58 | patient | 2 | Bacteroides.Otu2520 | 3.239e-04 |
| SM59 | patient | 3 | Bacteroides.Otu2520 | 2.996e-03 |
| SM60 | patient | 3 | Bacteroides.Otu2520 | 5.548e-02 |
| SM62 | patient | 1 | Bacteroides.Otu2520 | 1.525e-02 |
| SM63 | control | 1 | Bacteroides.Otu2520 | 4.324e-02 |
| SM64 | patient | 2 | Bacteroides.Otu2520 | 9.297e-03 |
| SM65 | patient | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM66 | control | 1 | Bacteroides.Otu2520 | 9.282e-02 |
| SM67 | patient | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM68 | patient | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM69 | patient | 4 | Bacteroides.Otu2520 | 1.197e-02 |
| SM7 | control | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM70 | control | 1 | Bacteroides.Otu2520 | 5.961e-03 |
| SM71 | patient | 3 | Bacteroides.Otu2520 | 2.162e-02 |
| SM72 | control | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM73 | patient | 1 | Bacteroides.Otu2520 | 5.047e-04 |
| SM74 | control | 2 | Bacteroides.Otu2520 | 0.000e+00 |
| SM75 | patient | 3 | Bacteroides.Otu2520 | 2.037e-03 |
| SM76 | control | 1 | Bacteroides.Otu2520 | 1.085e-02 |
| SM77 | patient | 2 | Bacteroides.Otu2520 | 8.359e-02 |
| SM79 | patient | 2 | Bacteroides.Otu2520 | 1.576e-02 |
| SM8 | patient | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM81 | control | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM82 | patient | 4 | Bacteroides.Otu2520 | 3.568e-01 |
| SM83 | patient | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM84 | patient | 1 | Bacteroides.Otu2520 | 2.912e-03 |
| SM86 | patient | 2 | Bacteroides.Otu2520 | 0.000e+00 |
| SM87 | patient | 1 | Bacteroides.Otu2520 | 4.566e-02 |
| SM88 | patient | 2 | Bacteroides.Otu2520 | 1.604e-01 |
| SM89 | control | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM9 | patient | 2 | Bacteroides.Otu2520 | 5.636e-02 |
| SM90 | patient | 2 | Bacteroides.Otu2520 | 2.558e-02 |
| SM91 | patient | 3 | Bacteroides.Otu2520 | 8.567e-02 |
| SM92 | patient | 3 | Bacteroides.Otu2520 | 9.504e-03 |
| SM93 | patient | 1 | Bacteroides.Otu2520 | 4.034e-04 |
| SM95 | control | 1 | Bacteroides.Otu2520 | 6.748e-02 |
| SM96 | patient | 1 | Bacteroides.Otu2520 | 4.602e-01 |
| SM98 | patient | 3 | Bacteroides.Otu2520 | 9.832e-04 |
| SM99 | patient | 3 | Bacteroides.Otu2520 | 4.757e-04 |
| SM1 | patient | 1 | Faecalibacterium.Otu0067 | 6.148e-03 |
| SM10 | patient | 3 | Faecalibacterium.Otu0067 | 1.051e-01 |
| SM100 | patient | 4 | Faecalibacterium.Otu0067 | 6.200e-02 |
| SM11 | patient | 2 | Faecalibacterium.Otu0067 | 1.893e-02 |
| SM12 | patient | 1 | Faecalibacterium.Otu0067 | 4.471e-03 |
| SM13 | patient | 1 | Faecalibacterium.Otu0067 | 8.929e-04 |
| SM14 | patient | 1 | Faecalibacterium.Otu0067 | 4.014e-02 |
| SM15 | control | 1 | Faecalibacterium.Otu0067 | 2.045e-02 |
| SM16 | patient | 4 | Faecalibacterium.Otu0067 | 1.237e-01 |
| SM17 | patient | 1 | Faecalibacterium.Otu0067 | 4.137e-04 |
| SM18 | patient | 2 | Faecalibacterium.Otu0067 | 3.022e-03 |
| SM19 | patient | 2 | Faecalibacterium.Otu0067 | 2.920e-01 |
| SM2 | patient | 1 | Faecalibacterium.Otu0067 | 9.919e-04 |
| SM20 | control | 1 | Faecalibacterium.Otu0067 | 8.058e-04 |
| SM21 | patient | 1 | Faecalibacterium.Otu0067 | 1.093e-02 |
| SM22 | patient | 1 | Faecalibacterium.Otu0067 | 4.607e-03 |
| SM23 | patient | 2 | Faecalibacterium.Otu0067 | 0.000e+00 |
| SM24 | patient | 1 | Faecalibacterium.Otu0067 | 1.839e-02 |
| SM25 | patient | 4 | Faecalibacterium.Otu0067 | 6.406e-02 |
| SM26 | control | 1 | Faecalibacterium.Otu0067 | 6.205e-03 |
| SM28 | control | 1 | Faecalibacterium.Otu0067 | 1.307e-01 |
| SM29 | patient | 3 | Faecalibacterium.Otu0067 | 3.342e-03 |
| SM3 | patient | 2 | Faecalibacterium.Otu0067 | 3.733e-03 |
| SM30 | patient | 4 | Faecalibacterium.Otu0067 | 1.202e-02 |
| SM31 | control | 2 | Faecalibacterium.Otu0067 | 2.427e-03 |
| SM33 | patient | 1 | Faecalibacterium.Otu0067 | 0.000e+00 |
(1.1.1.4.3.2.2.2.1.1.1) Widget 65. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type,visit. Click to see HTML widget file in full window: ./1.1.1.4.3.2.2.2.1.1.1-32349638518Dynamic.Pivot.Table.html
(1.1.1.4.3.2.2.2.1.1.1) Widget 66. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type,visit. Click to see HTML widget file in full window: ./1.1.1.4.3.2.2.2.1.1.1-3235e0bf528Dynamic.Pivot.Table.html
(1.1.1.4.3.2.2.2.1.1.1) Table 63. Summary table. Data grouped by Sample.type,visit. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.1.1.4.3.2.2.2.1.1.1-3231e3485b1.1.1.1.4.3.2.2.2.1.1.csv
| feature | Sample.type | visit | mean | sd | median | incidence |
|---|---|---|---|---|---|---|
| Bacteroides.Otu0001 | control | 1 | 5.373e-02 | 5.181e-02 | 4.124e-02 | 0.88889 |
| Bacteroides.Otu0001 | control | 2 | 4.724e-02 | 1.189e-02 | 4.724e-02 | 1.00000 |
| Bacteroides.Otu0001 | patient | 1 | 1.168e-01 | 1.255e-01 | 9.063e-02 | 0.82609 |
| Bacteroides.Otu0001 | patient | 2 | 1.024e-01 | 1.205e-01 | 3.656e-02 | 0.82353 |
| Bacteroides.Otu0001 | patient | 3 | 8.491e-02 | 1.066e-01 | 3.976e-02 | 0.64286 |
| Bacteroides.Otu0001 | patient | 4 | 8.982e-02 | 1.078e-01 | 3.835e-02 | 0.76923 |
| Bacteroides.Otu2520 | control | 1 | 4.824e-02 | 7.012e-02 | 1.518e-02 | 0.72222 |
| Bacteroides.Otu2520 | control | 2 | 5.866e-03 | 8.295e-03 | 5.866e-03 | 0.50000 |
| Bacteroides.Otu2520 | patient | 1 | 6.108e-02 | 1.054e-01 | 1.473e-02 | 0.86957 |
| Bacteroides.Otu2520 | patient | 2 | 3.555e-02 | 5.188e-02 | 9.465e-03 | 0.82353 |
| Bacteroides.Otu2520 | patient | 3 | 3.010e-02 | 6.631e-02 | 1.510e-03 | 0.64286 |
| Bacteroides.Otu2520 | patient | 4 | 6.208e-02 | 1.214e-01 | 3.250e-04 | 0.61538 |
| Faecalibacterium.Otu0067 | control | 1 | 2.757e-02 | 3.097e-02 | 2.053e-02 | 0.94444 |
| Faecalibacterium.Otu0067 | control | 2 | 2.134e-02 | 2.675e-02 | 2.134e-02 | 1.00000 |
| Faecalibacterium.Otu0067 | patient | 1 | 1.768e-02 | 1.932e-02 | 1.166e-02 | 0.95652 |
| Faecalibacterium.Otu0067 | patient | 2 | 4.572e-02 | 9.221e-02 | 9.465e-03 | 0.88235 |
| Faecalibacterium.Otu0067 | patient | 3 | 2.381e-02 | 2.918e-02 | 1.341e-02 | 0.92857 |
| Faecalibacterium.Otu0067 | patient | 4 | 4.894e-02 | 5.938e-02 | 2.672e-02 | 1.00000 |
| Prevotella.Otu1987 | control | 1 | 6.034e-02 | 1.115e-01 | 0.000e+00 | 0.33333 |
| Prevotella.Otu1987 | control | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.00000 |
| Prevotella.Otu1987 | patient | 1 | 3.124e-02 | 9.994e-02 | 0.000e+00 | 0.26087 |
| Prevotella.Otu1987 | patient | 2 | 3.192e-02 | 7.957e-02 | 0.000e+00 | 0.47059 |
| Prevotella.Otu1987 | patient | 3 | 1.874e-02 | 6.410e-02 | 0.000e+00 | 0.21429 |
| Prevotella.Otu1987 | patient | 4 | 4.165e-05 | 8.770e-05 | 0.000e+00 | 0.30769 |
| Bacteroides.Otu0848 | control | 1 | 1.065e-02 | 2.194e-02 | 1.240e-03 | 0.66667 |
| Bacteroides.Otu0848 | control | 2 | 4.248e-03 | 6.007e-03 | 4.248e-03 | 0.50000 |
| Bacteroides.Otu0848 | patient | 1 | 2.252e-02 | 3.495e-02 | 6.558e-03 | 0.86957 |
| Bacteroides.Otu0848 | patient | 2 | 1.478e-02 | 2.389e-02 | 2.060e-03 | 0.76471 |
| Bacteroides.Otu0848 | patient | 3 | 7.368e-02 | 1.374e-01 | 7.264e-03 | 0.64286 |
| Bacteroides.Otu0848 | patient | 4 | 3.335e-02 | 5.821e-02 | 1.387e-03 | 0.84615 |
| Bacteroides.Otu2038 | control | 1 | 1.297e-02 | 3.185e-02 | 2.747e-03 | 0.77778 |
| Bacteroides.Otu2038 | control | 2 | 2.898e-03 | 2.382e-03 | 2.898e-03 | 1.00000 |
| Bacteroides.Otu2038 | patient | 1 | 2.623e-02 | 6.465e-02 | 3.601e-03 | 0.86957 |
| Bacteroides.Otu2038 | patient | 2 | 1.914e-02 | 4.313e-02 | 3.327e-03 | 0.76471 |
| Bacteroides.Otu2038 | patient | 3 | 2.982e-02 | 8.896e-02 | 3.932e-03 | 0.64286 |
| Bacteroides.Otu2038 | patient | 4 | 4.044e-02 | 8.116e-02 | 1.341e-03 | 0.69231 |
| Parabacteroides.Otu1736 | control | 1 | 4.727e-03 | 5.893e-03 | 3.900e-03 | 0.83333 |
| Parabacteroides.Otu1736 | control | 2 | 8.764e-03 | 5.913e-03 | 8.764e-03 | 1.00000 |
| Parabacteroides.Otu1736 | patient | 1 | 2.509e-02 | 9.916e-02 | 1.328e-04 | 0.56522 |
| Parabacteroides.Otu1736 | patient | 2 | 4.847e-02 | 1.628e-01 | 0.000e+00 | 0.47059 |
| Parabacteroides.Otu1736 | patient | 3 | 2.566e-02 | 4.900e-02 | 2.089e-04 | 0.50000 |
| Parabacteroides.Otu1736 | patient | 4 | 1.245e-03 | 2.634e-03 | 0.000e+00 | 0.38462 |
| Bacteroides.Otu2654 | control | 1 | 5.269e-03 | 8.442e-03 | 5.437e-04 | 0.72222 |
| Bacteroides.Otu2654 | control | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.00000 |
| Bacteroides.Otu2654 | patient | 1 | 4.783e-02 | 9.677e-02 | 1.076e-02 | 0.78261 |
| Bacteroides.Otu2654 | patient | 2 | 6.019e-03 | 1.456e-02 | 8.251e-04 | 0.64706 |
| Bacteroides.Otu2654 | patient | 3 | 7.518e-03 | 2.057e-02 | 3.516e-04 | 0.71429 |
| Bacteroides.Otu2654 | patient | 4 | 8.816e-03 | 1.555e-02 | 6.232e-04 | 0.76923 |
| Bacteroides.Otu2065 | control | 1 | 7.046e-03 | 1.378e-02 | 0.000e+00 | 0.33333 |
| Bacteroides.Otu2065 | control | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.00000 |
| Bacteroides.Otu2065 | patient | 1 | 2.112e-02 | 8.207e-02 | 0.000e+00 | 0.21739 |
| Bacteroides.Otu2065 | patient | 2 | 6.964e-03 | 2.745e-02 | 0.000e+00 | 0.23529 |
| Bacteroides.Otu2065 | patient | 3 | 3.925e-02 | 1.403e-01 | 0.000e+00 | 0.21429 |
| Bacteroides.Otu2065 | patient | 4 | 1.719e-02 | 3.186e-02 | 0.000e+00 | 0.38462 |
| Bacteroides.Otu0863 | control | 1 | 7.645e-03 | 8.815e-03 | 6.083e-03 | 0.77778 |
| Bacteroides.Otu0863 | control | 2 | 6.250e-02 | 8.839e-02 | 6.250e-02 | 0.50000 |
| Bacteroides.Otu0863 | patient | 1 | 3.229e-02 | 5.790e-02 | 1.493e-02 | 0.86957 |
| Bacteroides.Otu0863 | patient | 2 | 1.189e-02 | 3.395e-02 | 3.239e-04 | 0.58824 |
| Bacteroides.Otu0863 | patient | 3 | 5.235e-03 | 7.618e-03 | 8.642e-04 | 0.57143 |
| Bacteroides.Otu0863 | patient | 4 | 1.266e-02 | 2.901e-02 | 6.500e-04 | 0.61538 |
| Bacteroides.Otu2431 | control | 1 | 1.752e-02 | 2.195e-02 | 6.948e-03 | 0.72222 |
| Bacteroides.Otu2431 | control | 2 | 1.133e-02 | 1.602e-02 | 1.133e-02 | 0.50000 |
| Bacteroides.Otu2431 | patient | 1 | 1.553e-02 | 2.341e-02 | 7.537e-03 | 0.82609 |
| Bacteroides.Otu2431 | patient | 2 | 1.552e-02 | 1.948e-02 | 1.151e-03 | 0.76471 |
| Bacteroides.Otu2431 | patient | 3 | 1.000e-02 | 1.290e-02 | 3.306e-03 | 0.78571 |
| Bacteroides.Otu2431 | patient | 4 | 2.651e-02 | 3.608e-02 | 8.739e-03 | 0.76923 |
| Bacteroides.Otu0929 | control | 1 | 7.901e-03 | 9.570e-03 | 4.583e-03 | 0.83333 |
| Bacteroides.Otu0929 | control | 2 | 1.136e-03 | 6.813e-04 | 1.136e-03 | 1.00000 |
| Bacteroides.Otu0929 | patient | 1 | 2.297e-02 | 4.878e-02 | 3.724e-03 | 0.73913 |
| Bacteroides.Otu0929 | patient | 2 | 1.557e-02 | 2.119e-02 | 7.838e-03 | 0.70588 |
| Bacteroides.Otu0929 | patient | 3 | 1.534e-02 | 2.263e-02 | 4.461e-03 | 0.64286 |
| Bacteroides.Otu0929 | patient | 4 | 1.128e-02 | 1.351e-02 | 1.271e-02 | 0.61538 |
| Bacteroides.Otu1201 | control | 1 | 3.699e-03 | 4.973e-03 | 2.154e-03 | 0.72222 |
| Bacteroides.Otu1201 | control | 2 | 2.104e-02 | 2.975e-02 | 2.104e-02 | 0.50000 |
| Bacteroides.Otu1201 | patient | 1 | 1.796e-02 | 4.252e-02 | 4.950e-03 | 0.82609 |
| Bacteroides.Otu1201 | patient | 2 | 3.298e-03 | 5.159e-03 | 9.464e-04 | 0.64706 |
| Bacteroides.Otu1201 | patient | 3 | 7.161e-03 | 1.720e-02 | 0.000e+00 | 0.42857 |
| Bacteroides.Otu1201 | patient | 4 | 3.302e-02 | 1.068e-01 | 0.000e+00 | 0.46154 |
| Bacteroides.Otu0786 | control | 1 | 1.213e-03 | 2.598e-03 | 0.000e+00 | 0.33333 |
| Bacteroides.Otu0786 | control | 2 | 1.618e-03 | 2.288e-03 | 1.618e-03 | 0.50000 |
| Bacteroides.Otu0786 | patient | 1 | 1.362e-02 | 5.207e-02 | 0.000e+00 | 0.47826 |
| Bacteroides.Otu0786 | patient | 2 | 2.502e-02 | 7.930e-02 | 0.000e+00 | 0.47059 |
| Bacteroides.Otu0786 | patient | 3 | 1.140e-02 | 2.458e-02 | 0.000e+00 | 0.35714 |
| Bacteroides.Otu0786 | patient | 4 | 1.288e-02 | 3.648e-02 | 0.000e+00 | 0.30769 |
| Alistipes.Otu2508 | control | 1 | 1.852e-02 | 2.951e-02 | 4.785e-03 | 0.66667 |
| Alistipes.Otu2508 | control | 2 | 5.057e-02 | 7.151e-02 | 5.057e-02 | 0.50000 |
| Alistipes.Otu2508 | patient | 1 | 1.774e-02 | 4.589e-02 | 5.195e-04 | 0.52174 |
| Alistipes.Otu2508 | patient | 2 | 7.004e-03 | 1.243e-02 | 0.000e+00 | 0.35294 |
| Alistipes.Otu2508 | patient | 3 | 4.125e-03 | 1.088e-02 | 0.000e+00 | 0.35714 |
| Alistipes.Otu2508 | patient | 4 | 4.789e-03 | 9.796e-03 | 0.000e+00 | 0.38462 |
| Bacteroides.Otu2625 | control | 1 | 6.692e-03 | 1.678e-02 | 6.631e-04 | 0.66667 |
| Bacteroides.Otu2625 | control | 2 | 4.248e-03 | 6.007e-03 | 4.248e-03 | 0.50000 |
| Bacteroides.Otu2625 | patient | 1 | 1.951e-02 | 4.503e-02 | 6.678e-04 | 0.65217 |
| Bacteroides.Otu2625 | patient | 2 | 6.004e-03 | 1.190e-02 | 0.000e+00 | 0.47059 |
| Bacteroides.Otu2625 | patient | 3 | 1.810e-02 | 6.380e-02 | 0.000e+00 | 0.42857 |
| Bacteroides.Otu2625 | patient | 4 | 6.002e-03 | 1.671e-02 | 0.000e+00 | 0.46154 |
| Lactobacillus.Otu1332 | control | 1 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.00000 |
| Lactobacillus.Otu1332 | control | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.00000 |
| Lactobacillus.Otu1332 | patient | 1 | 6.648e-05 | 1.999e-04 | 0.000e+00 | 0.13043 |
| Lactobacillus.Otu1332 | patient | 2 | 5.866e-02 | 2.418e-01 | 0.000e+00 | 0.11765 |
| Lactobacillus.Otu1332 | patient | 3 | 3.771e-04 | 1.267e-03 | 0.000e+00 | 0.14286 |
| Lactobacillus.Otu1332 | patient | 4 | 2.476e-05 | 8.927e-05 | 0.000e+00 | 0.07692 |
| Blautia.Otu2475 | control | 1 | 1.814e-02 | 4.375e-02 | 7.955e-03 | 1.00000 |
| Blautia.Otu2475 | control | 2 | 1.313e-02 | 1.800e-02 | 1.313e-02 | 1.00000 |
| Blautia.Otu2475 | patient | 1 | 6.579e-03 | 9.572e-03 | 2.046e-03 | 0.91304 |
| Blautia.Otu2475 | patient | 2 | 8.246e-03 | 1.284e-02 | 2.182e-03 | 0.82353 |
| Blautia.Otu2475 | patient | 3 | 1.626e-02 | 1.876e-02 | 1.049e-02 | 1.00000 |
| Blautia.Otu2475 | patient | 4 | 1.008e-02 | 1.295e-02 | 3.353e-03 | 1.00000 |
| Clostridium_XI.Otu1804 | control | 1 | 8.144e-03 | 1.014e-02 | 5.866e-03 | 0.94444 |
| Clostridium_XI.Otu1804 | control | 2 | 9.628e-03 | 6.752e-03 | 9.628e-03 | 1.00000 |
| Clostridium_XI.Otu1804 | patient | 1 | 1.197e-02 | 2.513e-02 | 2.170e-03 | 0.82609 |
| Clostridium_XI.Otu1804 | patient | 2 | 1.102e-02 | 3.350e-02 | 1.004e-03 | 0.76471 |
| Clostridium_XI.Otu1804 | patient | 3 | 6.055e-03 | 8.430e-03 | 1.934e-03 | 0.92857 |
| Clostridium_XI.Otu1804 | patient | 4 | 2.040e-02 | 3.328e-02 | 4.832e-03 | 1.00000 |
| Bacteroides.Otu0069 | control | 1 | 6.746e-03 | 6.781e-03 | 4.877e-03 | 0.77778 |
| Bacteroides.Otu0069 | control | 2 | 6.721e-03 | 2.068e-03 | 6.721e-03 | 1.00000 |
| Bacteroides.Otu0069 | patient | 1 | 1.411e-02 | 1.696e-02 | 1.076e-02 | 0.82609 |
| Bacteroides.Otu0069 | patient | 2 | 1.321e-02 | 1.506e-02 | 3.713e-03 | 0.76471 |
| Bacteroides.Otu0069 | patient | 3 | 1.110e-02 | 1.631e-02 | 2.610e-03 | 0.64286 |
| Bacteroides.Otu0069 | patient | 4 | 8.984e-03 | 1.193e-02 | 1.757e-03 | 0.69231 |
| Bacteroides.Otu2765 | control | 1 | 4.704e-03 | 7.441e-03 | 1.156e-03 | 0.72222 |
| Bacteroides.Otu2765 | control | 2 | 1.011e-03 | 1.430e-03 | 1.011e-03 | 0.50000 |
| Bacteroides.Otu2765 | patient | 1 | 1.268e-02 | 1.724e-02 | 5.045e-03 | 0.91304 |
| Bacteroides.Otu2765 | patient | 2 | 8.741e-03 | 1.310e-02 | 1.503e-03 | 0.70588 |
| Bacteroides.Otu2765 | patient | 3 | 1.885e-02 | 2.845e-02 | 4.255e-04 | 0.57143 |
| Bacteroides.Otu2765 | patient | 4 | 1.183e-02 | 1.842e-02 | 8.125e-04 | 0.76923 |
| Bacteroides.Otu0661 | control | 1 | 7.332e-03 | 9.733e-03 | 4.161e-03 | 0.66667 |
| Bacteroides.Otu0661 | control | 2 | 1.339e-03 | 9.673e-04 | 1.339e-03 | 1.00000 |
| Bacteroides.Otu0661 | patient | 1 | 1.387e-02 | 2.320e-02 | 3.919e-03 | 0.73913 |
| Bacteroides.Otu0661 | patient | 2 | 1.186e-02 | 1.657e-02 | 3.300e-03 | 0.70588 |
| Bacteroides.Otu0661 | patient | 3 | 1.011e-02 | 1.377e-02 | 2.137e-03 | 0.50000 |
| Bacteroides.Otu0661 | patient | 4 | 7.730e-03 | 1.025e-02 | 1.385e-03 | 0.61538 |
| Enterococcus.Otu1019 | control | 1 | 3.118e-03 | 1.311e-02 | 0.000e+00 | 0.16667 |
| Enterococcus.Otu1019 | control | 2 | 3.437e-03 | 4.861e-03 | 3.437e-03 | 0.50000 |
| Enterococcus.Otu1019 | patient | 1 | 3.367e-03 | 1.493e-02 | 0.000e+00 | 0.26087 |
| Enterococcus.Otu1019 | patient | 2 | 4.210e-02 | 1.720e-01 | 0.000e+00 | 0.41176 |
| Enterococcus.Otu1019 | patient | 3 | 2.699e-04 | 5.710e-04 | 0.000e+00 | 0.28571 |
| Enterococcus.Otu1019 | patient | 4 | 1.910e-04 | 6.012e-04 | 0.000e+00 | 0.15385 |
| Ruminococcus.Otu1859 | control | 1 | 3.248e-02 | 5.826e-02 | 6.379e-03 | 0.66667 |
| Ruminococcus.Otu1859 | control | 2 | 5.838e-02 | 8.085e-02 | 5.838e-02 | 1.00000 |
| Ruminococcus.Otu1859 | patient | 1 | 1.516e-03 | 5.680e-03 | 0.000e+00 | 0.26087 |
| Ruminococcus.Otu1859 | patient | 2 | 5.155e-04 | 1.790e-03 | 0.000e+00 | 0.23529 |
| Ruminococcus.Otu1859 | patient | 3 | 5.691e-03 | 2.122e-02 | 0.000e+00 | 0.14286 |
| Ruminococcus.Otu1859 | patient | 4 | 6.578e-04 | 1.526e-03 | 0.000e+00 | 0.23077 |
| Alistipes.Otu1466 | control | 1 | 1.621e-02 | 4.029e-02 | 1.998e-04 | 0.50000 |
| Alistipes.Otu1466 | control | 2 | 7.811e-03 | 1.012e-02 | 7.811e-03 | 1.00000 |
| Alistipes.Otu1466 | patient | 1 | 1.086e-02 | 1.787e-02 | 2.576e-03 | 0.52174 |
| Alistipes.Otu1466 | patient | 2 | 1.322e-02 | 3.707e-02 | 0.000e+00 | 0.35294 |
| Alistipes.Otu1466 | patient | 3 | 2.084e-03 | 4.903e-03 | 0.000e+00 | 0.35714 |
| Alistipes.Otu1466 | patient | 4 | 1.656e-03 | 3.001e-03 | 0.000e+00 | 0.38462 |
| Erysipelotrichaceae_incertae_sedis.Otu0818 | control | 1 | 6.704e-04 | 1.343e-03 | 7.077e-05 | 0.50000 |
| Erysipelotrichaceae_incertae_sedis.Otu0818 | control | 2 | 8.955e-04 | 1.223e-04 | 8.955e-04 | 1.00000 |
| Erysipelotrichaceae_incertae_sedis.Otu0818 | patient | 1 | 1.994e-02 | 8.001e-02 | 9.525e-04 | 0.69565 |
| Erysipelotrichaceae_incertae_sedis.Otu0818 | patient | 2 | 1.488e-03 | 2.518e-03 | 3.410e-04 | 0.76471 |
| Erysipelotrichaceae_incertae_sedis.Otu0818 | patient | 3 | 8.981e-03 | 1.397e-02 | 2.219e-03 | 1.00000 |
| Erysipelotrichaceae_incertae_sedis.Otu0818 | patient | 4 | 1.508e-02 | 5.012e-02 | 9.325e-04 | 0.84615 |
| Bacteroides.Otu0006 | control | 1 | 5.163e-03 | 6.317e-03 | 3.693e-03 | 0.77778 |
| Bacteroides.Otu0006 | control | 2 | 8.955e-04 | 1.223e-04 | 8.955e-04 | 1.00000 |
| Bacteroides.Otu0006 | patient | 1 | 1.051e-02 | 9.565e-03 | 7.294e-03 | 0.82609 |
| Bacteroides.Otu0006 | patient | 2 | 1.063e-02 | 1.320e-02 | 5.285e-03 | 0.76471 |
| Bacteroides.Otu0006 | patient | 3 | 9.002e-03 | 1.122e-02 | 5.222e-03 | 0.57143 |
| Bacteroides.Otu0006 | patient | 4 | 1.226e-02 | 1.303e-02 | 9.315e-03 | 0.69231 |
| Bacteroides.Otu2343 | control | 1 | 7.090e-04 | 1.618e-03 | 0.000e+00 | 0.38889 |
| Bacteroides.Otu2343 | control | 2 | 6.068e-04 | 8.581e-04 | 6.068e-04 | 0.50000 |
| Bacteroides.Otu2343 | patient | 1 | 7.836e-03 | 2.709e-02 | 4.426e-05 | 0.52174 |
| Bacteroides.Otu2343 | patient | 2 | 1.645e-02 | 5.090e-02 | 1.028e-04 | 0.52941 |
| Bacteroides.Otu2343 | patient | 3 | 7.405e-03 | 1.561e-02 | 0.000e+00 | 0.35714 |
| Bacteroides.Otu2343 | patient | 4 | 1.140e-02 | 3.140e-02 | 0.000e+00 | 0.30769 |
| Lachnospiracea_incertae_sedis.Otu0778 | control | 1 | 2.020e-03 | 2.017e-03 | 1.729e-03 | 0.77778 |
| Lachnospiracea_incertae_sedis.Otu0778 | control | 2 | 4.255e-03 | 6.018e-03 | 4.255e-03 | 0.50000 |
| Lachnospiracea_incertae_sedis.Otu0778 | patient | 1 | 1.813e-03 | 3.516e-03 | 3.708e-04 | 0.56522 |
| Lachnospiracea_incertae_sedis.Otu0778 | patient | 2 | 6.233e-03 | 1.008e-02 | 1.343e-03 | 0.76471 |
| Lachnospiracea_incertae_sedis.Otu0778 | patient | 3 | 6.674e-03 | 1.333e-02 | 7.028e-04 | 0.57143 |
| Lachnospiracea_incertae_sedis.Otu0778 | patient | 4 | 3.192e-02 | 5.684e-02 | 9.750e-03 | 0.69231 |
| Prevotella.Otu1633 | control | 1 | 4.917e-03 | 1.109e-02 | 0.000e+00 | 0.38889 |
| Prevotella.Otu1633 | control | 2 | 3.273e-04 | 4.629e-04 | 3.273e-04 | 0.50000 |
| Prevotella.Otu1633 | patient | 1 | 4.798e-03 | 1.274e-02 | 0.000e+00 | 0.43478 |
| Prevotella.Otu1633 | patient | 2 | 2.845e-02 | 1.138e-01 | 0.000e+00 | 0.29412 |
| Prevotella.Otu1633 | patient | 3 | 1.804e-04 | 4.922e-04 | 0.000e+00 | 0.35714 |
| Prevotella.Otu1633 | patient | 4 | 3.356e-04 | 1.210e-03 | 0.000e+00 | 0.07692 |
| Bacteroides.Otu2437 | control | 1 | 1.140e-02 | 2.451e-02 | 4.701e-04 | 0.66667 |
| Bacteroides.Otu2437 | control | 2 | 9.709e-03 | 1.373e-02 | 9.709e-03 | 0.50000 |
| Bacteroides.Otu2437 | patient | 1 | 3.057e-03 | 6.170e-03 | 0.000e+00 | 0.47826 |
| Bacteroides.Otu2437 | patient | 2 | 8.595e-03 | 2.110e-02 | 0.000e+00 | 0.35294 |
| Bacteroides.Otu2437 | patient | 3 | 3.449e-03 | 8.349e-03 | 0.000e+00 | 0.35714 |
| Bacteroides.Otu2437 | patient | 4 | 1.275e-02 | 2.527e-02 | 0.000e+00 | 0.46154 |
| Escherichia_Shigella.Otu2393 | control | 1 | 1.014e-02 | 3.951e-02 | 3.219e-04 | 0.55556 |
| Escherichia_Shigella.Otu2393 | control | 2 | 4.045e-04 | 5.721e-04 | 4.045e-04 | 0.50000 |
| Escherichia_Shigella.Otu2393 | patient | 1 | 1.408e-02 | 4.403e-02 | 0.000e+00 | 0.39130 |
| Escherichia_Shigella.Otu2393 | patient | 2 | 3.576e-04 | 1.298e-03 | 0.000e+00 | 0.29412 |
| Escherichia_Shigella.Otu2393 | patient | 3 | 2.305e-03 | 5.001e-03 | 3.234e-04 | 0.64286 |
| Escherichia_Shigella.Otu2393 | patient | 4 | 7.439e-03 | 1.716e-02 | 8.323e-05 | 0.53846 |
| Prevotella.Otu1994 | control | 1 | 2.627e-02 | 6.026e-02 | 0.000e+00 | 0.22222 |
| Prevotella.Otu1994 | control | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.00000 |
| Prevotella.Otu1994 | patient | 1 | 3.362e-03 | 1.356e-02 | 0.000e+00 | 0.08696 |
| Prevotella.Otu1994 | patient | 2 | 4.061e-03 | 1.675e-02 | 0.000e+00 | 0.05882 |
| Prevotella.Otu1994 | patient | 3 | 4.960e-04 | 1.833e-03 | 0.000e+00 | 0.14286 |
| Prevotella.Otu1994 | patient | 4 | 2.352e-06 | 8.481e-06 | 0.000e+00 | 0.07692 |
| Bacteroides.Otu0480 | control | 1 | 1.057e-02 | 3.008e-02 | 0.000e+00 | 0.33333 |
| Bacteroides.Otu0480 | control | 2 | 3.236e-02 | 4.577e-02 | 3.236e-02 | 0.50000 |
(1.1.1.4.3.2.2.2.1.1.1) Figure 194. Abundance. Data grouped by Sample.type,visit. bar_stacked plot. Image file: plots/323100ecb64.svg.
(1.1.1.4.3.2.2.2.1.1.1) Figure 195. Abundance. Data grouped by Sample.type,visit. bar (sample mean) plot. Image file: plots/3233a2fa2a3.svg. 
(1.1.1.4.3.2.2.2.1.1.1) Figure 196. Abundance. Data grouped by Sample.type,visit. violin plot. Image file: plots/3231eee42e7.svg. 
(1.1.1.4.3.2.2.2.1.1.1) Figure 197. Abundance. Data grouped by Sample.type,visit. boxplot plot. Image file: plots/32328653ce6.svg. 
(1.1.1.4.3.2.2.2.1.2.1) Figure 198. Abundance. Data grouped by Sample.type,visit. bar (sample mean) plot. Image file: plots/32331f28f16.svg. 
(1.1.1.4.3.2.2.2.1.2.1) Figure 199. Abundance. Data grouped by Sample.type,visit. violin plot. Image file: plots/323391c1196.svg. 
(1.1.1.4.3.2.2.2.1.2.1) Figure 200. Abundance. Data grouped by Sample.type,visit. boxplot plot. Image file: plots/3235d49b5fe.svg. 
(1.1.1.4.3.2.2.2.2.1.1) Figure 201. Abundance. Data grouped by Sample.type,visit. bar (sample mean) plot. Image file: plots/32346bd8ca3.svg. 
(1.1.1.4.3.2.2.2.2.1.1) Figure 202. Abundance. Data grouped by Sample.type,visit. violin plot. Image file: plots/323178a5fad.svg. 
(1.1.1.4.3.2.2.2.2.1.1) Figure 203. Abundance. Data grouped by Sample.type,visit. boxplot plot. Image file: plots/323624018a4.svg. 
(1.1.1.4.3.2.2.2.2.2.1) Figure 204. Abundance. Data grouped by Sample.type,visit. bar (sample mean) plot. Image file: plots/32319f5b08d.svg. 
(1.1.1.4.3.2.2.2.2.2.1) Figure 205. Abundance. Data grouped by Sample.type,visit. violin plot. Image file: plots/3239bd6ad9.svg. 
(1.1.1.4.3.2.2.2.2.2.1) Figure 206. Abundance. Data grouped by Sample.type,visit. boxplot plot. Image file: plots/32343504bf1.svg. 
The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.
(1.1.1.4.3.2.4.2.1.1.0) Table 64. Data table used for plots. Data grouped by Sample.type.Drug.Before,visit. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.1.1.4.3.2.4.2.1.1.0-3232a14e04a.1.1.1.4.3.2.4.2.1.1.csv
| .record.id | Sample.type.Drug.Before | visit | feature | Abundance |
|---|---|---|---|---|
| SM1 | patient TRUE . | 1 | Bacteroides.Otu0001 | 3.325e-02 |
| SM10 | patient TRUE . | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM100 | patient TRUE . | 4 | Bacteroides.Otu0001 | 7.692e-05 |
| SM11 | patient TRUE . | 2 | Bacteroides.Otu0001 | 2.280e-01 |
| SM12 | patient TRUE . | 1 | Bacteroides.Otu0001 | 2.363e-01 |
| SM13 | patient FALSE . | 1 | Bacteroides.Otu0001 | 2.143e-02 |
| SM14 | patient FALSE . | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM15 | 1 | 1 | Bacteroides.Otu0001 | 3.935e-02 |
| SM16 | patient FALSE . | 4 | Bacteroides.Otu0001 | 3.835e-02 |
| SM17 | patient TRUE . | 1 | Bacteroides.Otu0001 | 1.738e-01 |
| SM18 | patient FALSE . | 2 | Bacteroides.Otu0001 | 1.343e-03 |
| SM19 | patient FALSE . | 2 | Bacteroides.Otu0001 | 3.656e-02 |
| SM2 | patient FALSE . | 1 | Bacteroides.Otu0001 | 7.129e-03 |
| SM20 | 1 | 1 | Bacteroides.Otu0001 | 5.936e-02 |
| SM21 | patient FALSE . | 1 | Bacteroides.Otu0001 | 9.063e-02 |
| SM22 | patient TRUE . | 1 | Bacteroides.Otu0001 | 1.800e-01 |
| SM23 | patient TRUE . | 2 | Bacteroides.Otu0001 | 2.207e-01 |
| SM24 | patient FALSE . | 1 | Bacteroides.Otu0001 | 6.084e-02 |
| SM25 | patient FALSE . | 4 | Bacteroides.Otu0001 | 0.000e+00 |
| SM26 | 1 | 1 | Bacteroides.Otu0001 | 5.819e-02 |
| SM28 | 1 | 1 | Bacteroides.Otu0001 | 1.415e-01 |
| SM29 | patient TRUE . | 3 | Bacteroides.Otu0001 | 1.015e-01 |
| SM3 | patient TRUE . | 2 | Bacteroides.Otu0001 | 5.679e-02 |
| SM30 | patient TRUE . | 4 | Bacteroides.Otu0001 | 4.615e-02 |
| SM31 | 1 | 2 | Bacteroides.Otu0001 | 3.883e-02 |
| SM33 | patient TRUE . | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM35 | 1 | 1 | Bacteroides.Otu0001 | 1.546e-02 |
| SM36 | patient FALSE . | 4 | Bacteroides.Otu0001 | 0.000e+00 |
| SM37 | 1 | 1 | Bacteroides.Otu0001 | 8.035e-02 |
| SM38 | patient TRUE . | 2 | Bacteroides.Otu0001 | 2.849e-01 |
| SM39 | patient FALSE . | 1 | Bacteroides.Otu0001 | 1.512e-01 |
| SM40 | patient FALSE . | 4 | Bacteroides.Otu0001 | 1.767e-02 |
| SM41 | patient TRUE . | 1 | Bacteroides.Otu0001 | 4.380e-02 |
| SM42 | patient FALSE . | 4 | Bacteroides.Otu0001 | 2.641e-01 |
| SM43 | patient TRUE . | 4 | Bacteroides.Otu0001 | 1.241e-01 |
| SM44 | 1 | 1 | Bacteroides.Otu0001 | 5.478e-04 |
| SM45 | patient FALSE . | 2 | Bacteroides.Otu0001 | 0.000e+00 |
| SM48 | 1 | 1 | Bacteroides.Otu0001 | 6.268e-02 |
| SM49 | patient TRUE . | 1 | Bacteroides.Otu0001 | 1.179e-01 |
| SM5 | patient TRUE . | 3 | Bacteroides.Otu0001 | 2.741e-01 |
| SM50 | patient FALSE . | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM51 | patient TRUE . | 4 | Bacteroides.Otu0001 | 2.826e-01 |
| SM52 | patient FALSE . | 1 | Bacteroides.Otu0001 | 5.829e-02 |
| SM53 | patient TRUE . | 2 | Bacteroides.Otu0001 | 2.368e-01 |
| SM54 | patient TRUE . | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM55 | 1 | 1 | Bacteroides.Otu0001 | 2.798e-02 |
| SM56 | patient TRUE . | 2 | Bacteroides.Otu0001 | 0.000e+00 |
| SM57 | patient TRUE . | 1 | Bacteroides.Otu0001 | 1.037e-01 |
| SM58 | patient FALSE . | 2 | Bacteroides.Otu0001 | 1.620e-04 |
| SM59 | patient FALSE . | 3 | Bacteroides.Otu0001 | 3.745e-03 |
| SM60 | patient TRUE . | 3 | Bacteroides.Otu0001 | 2.447e-01 |
| SM62 | patient TRUE . | 1 | Bacteroides.Otu0001 | 5.347e-01 |
| SM63 | 1 | 1 | Bacteroides.Otu0001 | 8.649e-02 |
| SM64 | patient TRUE . | 2 | Bacteroides.Otu0001 | 3.508e-01 |
| SM65 | patient TRUE . | 3 | Bacteroides.Otu0001 | 8.092e-02 |
| SM66 | 1 | 1 | Bacteroides.Otu0001 | 1.585e-01 |
| SM67 | patient TRUE . | 4 | Bacteroides.Otu0001 | 2.186e-01 |
| SM68 | patient FALSE . | 4 | Bacteroides.Otu0001 | 0.000e+00 |
| SM69 | patient TRUE . | 4 | Bacteroides.Otu0001 | 1.655e-01 |
| SM7 | 1 | 1 | Bacteroides.Otu0001 | 4.313e-02 |
| SM70 | 1 | 1 | Bacteroides.Otu0001 | 1.567e-02 |
| SM71 | patient TRUE . | 3 | Bacteroides.Otu0001 | 2.788e-01 |
| SM72 | 1 | 1 | Bacteroides.Otu0001 | 1.323e-03 |
| SM73 | patient FALSE . | 1 | Bacteroides.Otu0001 | 1.891e-01 |
| SM74 | 1 | 2 | Bacteroides.Otu0001 | 5.565e-02 |
| SM75 | patient FALSE . | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM76 | 1 | 1 | Bacteroides.Otu0001 | 2.751e-02 |
| SM77 | patient TRUE . | 2 | Bacteroides.Otu0001 | 2.034e-01 |
| SM79 | patient FALSE . | 2 | Bacteroides.Otu0001 | 2.642e-02 |
| SM8 | patient FALSE . | 1 | Bacteroides.Otu0001 | 5.265e-02 |
| SM81 | 1 | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM82 | patient TRUE . | 4 | Bacteroides.Otu0001 | 1.052e-02 |
| SM83 | patient TRUE . | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM84 | patient TRUE . | 1 | Bacteroides.Otu0001 | 1.247e-01 |
| SM86 | patient TRUE . | 2 | Bacteroides.Otu0001 | 0.000e+00 |
| SM87 | patient TRUE . | 1 | Bacteroides.Otu0001 | 1.941e-01 |
| SM88 | patient TRUE . | 2 | Bacteroides.Otu0001 | 2.302e-02 |
| SM89 | 1 | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM9 | patient FALSE . | 2 | Bacteroides.Otu0001 | 3.497e-02 |
| SM90 | patient FALSE . | 2 | Bacteroides.Otu0001 | 3.713e-02 |
| SM91 | patient TRUE . | 3 | Bacteroides.Otu0001 | 1.254e-01 |
| SM92 | patient FALSE . | 3 | Bacteroides.Otu0001 | 0.000e+00 |
| SM93 | patient TRUE . | 1 | Bacteroides.Otu0001 | 3.120e-01 |
| SM95 | 1 | 1 | Bacteroides.Otu0001 | 1.492e-01 |
| SM96 | patient FALSE . | 1 | Bacteroides.Otu0001 | 0.000e+00 |
| SM98 | patient FALSE . | 3 | Bacteroides.Otu0001 | 3.648e-02 |
| SM99 | patient FALSE . | 3 | Bacteroides.Otu0001 | 4.305e-02 |
| SM1 | patient TRUE . | 1 | Bacteroides.Otu2520 | 1.003e-01 |
| SM10 | patient TRUE . | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM100 | patient TRUE . | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM11 | patient TRUE . | 2 | Bacteroides.Otu2520 | 1.344e-01 |
| SM12 | patient TRUE . | 1 | Bacteroides.Otu2520 | 1.504e-01 |
| SM13 | patient FALSE . | 1 | Bacteroides.Otu2520 | 1.473e-02 |
| SM14 | patient FALSE . | 1 | Bacteroides.Otu2520 | 3.786e-04 |
| SM15 | 1 | 1 | Bacteroides.Otu2520 | 1.756e-01 |
| SM16 | patient FALSE . | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM17 | patient TRUE . | 1 | Bacteroides.Otu2520 | 1.862e-02 |
| SM18 | patient FALSE . | 2 | Bacteroides.Otu2520 | 1.074e-02 |
| SM19 | patient FALSE . | 2 | Bacteroides.Otu2520 | 9.255e-04 |
| SM2 | patient FALSE . | 1 | Bacteroides.Otu2520 | 1.638e-01 |
| SM20 | 1 | 1 | Bacteroides.Otu2520 | 2.417e-01 |
| SM21 | patient FALSE . | 1 | Bacteroides.Otu2520 | 4.540e-03 |
| SM22 | patient TRUE . | 1 | Bacteroides.Otu2520 | 2.610e-02 |
| SM23 | patient TRUE . | 2 | Bacteroides.Otu2520 | 0.000e+00 |
| SM24 | patient FALSE . | 1 | Bacteroides.Otu2520 | 5.531e-03 |
| SM25 | patient FALSE . | 4 | Bacteroides.Otu2520 | 3.053e-01 |
| SM26 | 1 | 1 | Bacteroides.Otu2520 | 4.378e-02 |
| SM28 | 1 | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM29 | patient TRUE . | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM3 | patient TRUE . | 2 | Bacteroides.Otu2520 | 5.657e-04 |
| SM30 | patient TRUE . | 4 | Bacteroides.Otu2520 | 3.250e-04 |
| SM31 | 1 | 2 | Bacteroides.Otu2520 | 1.173e-02 |
| SM33 | patient TRUE . | 1 | Bacteroides.Otu2520 | 7.120e-02 |
| SM35 | 1 | 1 | Bacteroides.Otu2520 | 1.330e-01 |
| SM36 | patient FALSE . | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM37 | 1 | 1 | Bacteroides.Otu2520 | 3.158e-02 |
| SM38 | patient TRUE . | 2 | Bacteroides.Otu2520 | 9.696e-02 |
| SM39 | patient FALSE . | 1 | Bacteroides.Otu2520 | 8.620e-03 |
| SM40 | patient FALSE . | 4 | Bacteroides.Otu2520 | 5.920e-02 |
| SM41 | patient TRUE . | 1 | Bacteroides.Otu2520 | 1.440e-01 |
| SM42 | patient FALSE . | 4 | Bacteroides.Otu2520 | 1.665e-04 |
| SM43 | patient TRUE . | 4 | Bacteroides.Otu2520 | 3.957e-02 |
| SM44 | 1 | 1 | Bacteroides.Otu2520 | 1.369e-03 |
| SM45 | patient FALSE . | 2 | Bacteroides.Otu2520 | 0.000e+00 |
| SM48 | 1 | 1 | Bacteroides.Otu2520 | 1.951e-02 |
| SM49 | patient TRUE . | 1 | Bacteroides.Otu2520 | 1.715e-01 |
| SM5 | patient TRUE . | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM50 | patient FALSE . | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM51 | patient TRUE . | 4 | Bacteroides.Otu2520 | 3.368e-02 |
| SM52 | patient FALSE . | 1 | Bacteroides.Otu2520 | 2.179e-04 |
| SM53 | patient TRUE . | 2 | Bacteroides.Otu2520 | 7.192e-05 |
| SM54 | patient TRUE . | 3 | Bacteroides.Otu2520 | 2.426e-01 |
| SM55 | 1 | 1 | Bacteroides.Otu2520 | 1.289e-03 |
| SM56 | patient TRUE . | 2 | Bacteroides.Otu2520 | 9.465e-03 |
| SM57 | patient TRUE . | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM58 | patient FALSE . | 2 | Bacteroides.Otu2520 | 3.239e-04 |
| SM59 | patient FALSE . | 3 | Bacteroides.Otu2520 | 2.996e-03 |
| SM60 | patient TRUE . | 3 | Bacteroides.Otu2520 | 5.548e-02 |
| SM62 | patient TRUE . | 1 | Bacteroides.Otu2520 | 1.525e-02 |
| SM63 | 1 | 1 | Bacteroides.Otu2520 | 4.324e-02 |
| SM64 | patient TRUE . | 2 | Bacteroides.Otu2520 | 9.297e-03 |
| SM65 | patient TRUE . | 3 | Bacteroides.Otu2520 | 0.000e+00 |
| SM66 | 1 | 1 | Bacteroides.Otu2520 | 9.282e-02 |
| SM67 | patient TRUE . | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM68 | patient FALSE . | 4 | Bacteroides.Otu2520 | 0.000e+00 |
| SM69 | patient TRUE . | 4 | Bacteroides.Otu2520 | 1.197e-02 |
| SM7 | 1 | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM70 | 1 | 1 | Bacteroides.Otu2520 | 5.961e-03 |
| SM71 | patient TRUE . | 3 | Bacteroides.Otu2520 | 2.162e-02 |
| SM72 | 1 | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM73 | patient FALSE . | 1 | Bacteroides.Otu2520 | 5.047e-04 |
| SM74 | 1 | 2 | Bacteroides.Otu2520 | 0.000e+00 |
| SM75 | patient FALSE . | 3 | Bacteroides.Otu2520 | 2.037e-03 |
| SM76 | 1 | 1 | Bacteroides.Otu2520 | 1.085e-02 |
| SM77 | patient TRUE . | 2 | Bacteroides.Otu2520 | 8.359e-02 |
| SM79 | patient FALSE . | 2 | Bacteroides.Otu2520 | 1.576e-02 |
| SM8 | patient FALSE . | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM81 | 1 | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM82 | patient TRUE . | 4 | Bacteroides.Otu2520 | 3.568e-01 |
| SM83 | patient TRUE . | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM84 | patient TRUE . | 1 | Bacteroides.Otu2520 | 2.912e-03 |
| SM86 | patient TRUE . | 2 | Bacteroides.Otu2520 | 0.000e+00 |
| SM87 | patient TRUE . | 1 | Bacteroides.Otu2520 | 4.566e-02 |
| SM88 | patient TRUE . | 2 | Bacteroides.Otu2520 | 1.604e-01 |
| SM89 | 1 | 1 | Bacteroides.Otu2520 | 0.000e+00 |
| SM9 | patient FALSE . | 2 | Bacteroides.Otu2520 | 5.636e-02 |
| SM90 | patient FALSE . | 2 | Bacteroides.Otu2520 | 2.558e-02 |
| SM91 | patient TRUE . | 3 | Bacteroides.Otu2520 | 8.567e-02 |
| SM92 | patient FALSE . | 3 | Bacteroides.Otu2520 | 9.504e-03 |
| SM93 | patient TRUE . | 1 | Bacteroides.Otu2520 | 4.034e-04 |
| SM95 | 1 | 1 | Bacteroides.Otu2520 | 6.748e-02 |
| SM96 | patient FALSE . | 1 | Bacteroides.Otu2520 | 4.602e-01 |
| SM98 | patient FALSE . | 3 | Bacteroides.Otu2520 | 9.832e-04 |
| SM99 | patient FALSE . | 3 | Bacteroides.Otu2520 | 4.757e-04 |
| SM1 | patient TRUE . | 1 | Faecalibacterium.Otu0067 | 6.148e-03 |
| SM10 | patient TRUE . | 3 | Faecalibacterium.Otu0067 | 1.051e-01 |
| SM100 | patient TRUE . | 4 | Faecalibacterium.Otu0067 | 6.200e-02 |
| SM11 | patient TRUE . | 2 | Faecalibacterium.Otu0067 | 1.893e-02 |
| SM12 | patient TRUE . | 1 | Faecalibacterium.Otu0067 | 4.471e-03 |
| SM13 | patient FALSE . | 1 | Faecalibacterium.Otu0067 | 8.929e-04 |
| SM14 | patient FALSE . | 1 | Faecalibacterium.Otu0067 | 4.014e-02 |
| SM15 | 1 | 1 | Faecalibacterium.Otu0067 | 2.045e-02 |
| SM16 | patient FALSE . | 4 | Faecalibacterium.Otu0067 | 1.237e-01 |
| SM17 | patient TRUE . | 1 | Faecalibacterium.Otu0067 | 4.137e-04 |
| SM18 | patient FALSE . | 2 | Faecalibacterium.Otu0067 | 3.022e-03 |
| SM19 | patient FALSE . | 2 | Faecalibacterium.Otu0067 | 2.920e-01 |
| SM2 | patient FALSE . | 1 | Faecalibacterium.Otu0067 | 9.919e-04 |
| SM20 | 1 | 1 | Faecalibacterium.Otu0067 | 8.058e-04 |
| SM21 | patient FALSE . | 1 | Faecalibacterium.Otu0067 | 1.093e-02 |
| SM22 | patient TRUE . | 1 | Faecalibacterium.Otu0067 | 4.607e-03 |
| SM23 | patient TRUE . | 2 | Faecalibacterium.Otu0067 | 0.000e+00 |
| SM24 | patient FALSE . | 1 | Faecalibacterium.Otu0067 | 1.839e-02 |
| SM25 | patient FALSE . | 4 | Faecalibacterium.Otu0067 | 6.406e-02 |
| SM26 | 1 | 1 | Faecalibacterium.Otu0067 | 6.205e-03 |
| SM28 | 1 | 1 | Faecalibacterium.Otu0067 | 1.307e-01 |
| SM29 | patient TRUE . | 3 | Faecalibacterium.Otu0067 | 3.342e-03 |
| SM3 | patient TRUE . | 2 | Faecalibacterium.Otu0067 | 3.733e-03 |
| SM30 | patient TRUE . | 4 | Faecalibacterium.Otu0067 | 1.202e-02 |
| SM31 | 1 | 2 | Faecalibacterium.Otu0067 | 2.427e-03 |
| SM33 | patient TRUE . | 1 | Faecalibacterium.Otu0067 | 0.000e+00 |
(1.1.1.4.3.2.4.2.1.1.1) Widget 67. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type.Drug.Before,visit. Click to see HTML widget file in full window: ./1.1.1.4.3.2.4.2.1.1.1-3236ebfe9d0Dynamic.Pivot.Table.html
(1.1.1.4.3.2.4.2.1.1.1) Widget 68. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type.Drug.Before,visit. Click to see HTML widget file in full window: ./1.1.1.4.3.2.4.2.1.1.1-32327db687bDynamic.Pivot.Table.html
(1.1.1.4.3.2.4.2.1.1.1) Table 65. Summary table. Data grouped by Sample.type.Drug.Before,visit. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.1.1.4.3.2.4.2.1.1.1-3236113f391.1.1.1.4.3.2.4.2.1.1.csv
| feature | Sample.type.Drug.Before | visit | mean | sd | median | incidence |
|---|---|---|---|---|---|---|
| Bacteroides.Otu0001 | 1 | 1 | 5.373e-02 | 5.181e-02 | 4.124e-02 | 0.8889 |
| Bacteroides.Otu0001 | 1 | 2 | 4.724e-02 | 1.189e-02 | 4.724e-02 | 1.0000 |
| Bacteroides.Otu0001 | patient FALSE . | 1 | 6.313e-02 | 6.443e-02 | 5.547e-02 | 0.8000 |
| Bacteroides.Otu0001 | patient FALSE . | 2 | 1.951e-02 | 1.813e-02 | 2.642e-02 | 0.8571 |
| Bacteroides.Otu0001 | patient FALSE . | 3 | 1.388e-02 | 2.021e-02 | 1.873e-03 | 0.5000 |
| Bacteroides.Otu0001 | patient FALSE . | 4 | 5.335e-02 | 1.044e-01 | 8.834e-03 | 0.5000 |
| Bacteroides.Otu0001 | patient TRUE . | 1 | 1.580e-01 | 1.466e-01 | 1.247e-01 | 0.8462 |
| Bacteroides.Otu0001 | patient TRUE . | 2 | 1.604e-01 | 1.285e-01 | 2.120e-01 | 0.8000 |
| Bacteroides.Otu0001 | patient TRUE . | 3 | 1.382e-01 | 1.150e-01 | 1.135e-01 | 0.7500 |
| Bacteroides.Otu0001 | patient TRUE . | 4 | 1.211e-01 | 1.081e-01 | 1.241e-01 | 1.0000 |
| Bacteroides.Otu2520 | 1 | 1 | 4.824e-02 | 7.012e-02 | 1.518e-02 | 0.7222 |
| Bacteroides.Otu2520 | 1 | 2 | 5.866e-03 | 8.295e-03 | 5.866e-03 | 0.5000 |
| Bacteroides.Otu2520 | patient FALSE . | 1 | 6.585e-02 | 1.474e-01 | 5.035e-03 | 0.9000 |
| Bacteroides.Otu2520 | patient FALSE . | 2 | 1.567e-02 | 2.031e-02 | 1.074e-02 | 0.8571 |
| Bacteroides.Otu2520 | patient FALSE . | 3 | 2.666e-03 | 3.521e-03 | 1.510e-03 | 0.8333 |
| Bacteroides.Otu2520 | patient FALSE . | 4 | 6.078e-02 | 1.221e-01 | 8.323e-05 | 0.5000 |
| Bacteroides.Otu2520 | patient TRUE . | 1 | 5.741e-02 | 6.351e-02 | 2.610e-02 | 0.8462 |
| Bacteroides.Otu2520 | patient TRUE . | 2 | 4.947e-02 | 6.314e-02 | 9.381e-03 | 0.8000 |
| Bacteroides.Otu2520 | patient TRUE . | 3 | 5.067e-02 | 8.384e-02 | 1.081e-02 | 0.5000 |
| Bacteroides.Otu2520 | patient TRUE . | 4 | 6.319e-02 | 1.305e-01 | 1.197e-02 | 0.7143 |
| Faecalibacterium.Otu0067 | 1 | 1 | 2.757e-02 | 3.097e-02 | 2.053e-02 | 0.9444 |
| Faecalibacterium.Otu0067 | 1 | 2 | 2.134e-02 | 2.675e-02 | 2.134e-02 | 1.0000 |
| Faecalibacterium.Otu0067 | patient FALSE . | 1 | 2.447e-02 | 2.587e-02 | 1.503e-02 | 1.0000 |
| Faecalibacterium.Otu0067 | patient FALSE . | 2 | 5.462e-02 | 1.055e-01 | 1.279e-02 | 0.8571 |
| Faecalibacterium.Otu0067 | patient FALSE . | 3 | 1.630e-02 | 1.924e-02 | 6.763e-03 | 0.8333 |
| Faecalibacterium.Otu0067 | patient FALSE . | 4 | 7.234e-02 | 7.795e-02 | 4.539e-02 | 1.0000 |
| Faecalibacterium.Otu0067 | patient TRUE . | 1 | 1.246e-02 | 1.071e-02 | 6.632e-03 | 0.9231 |
| Faecalibacterium.Otu0067 | patient TRUE . | 2 | 3.949e-02 | 8.710e-02 | 7.349e-03 | 0.9000 |
| Faecalibacterium.Otu0067 | patient TRUE . | 3 | 2.944e-02 | 3.510e-02 | 1.759e-02 | 1.0000 |
| Faecalibacterium.Otu0067 | patient TRUE . | 4 | 2.888e-02 | 3.115e-02 | 1.202e-02 | 1.0000 |
| Prevotella.Otu1987 | 1 | 1 | 6.034e-02 | 1.115e-01 | 0.000e+00 | 0.3333 |
| Prevotella.Otu1987 | 1 | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Prevotella.Otu1987 | patient FALSE . | 1 | 5.770e-02 | 1.480e-01 | 0.000e+00 | 0.4000 |
| Prevotella.Otu1987 | patient FALSE . | 2 | 4.991e-02 | 1.044e-01 | 0.000e+00 | 0.4286 |
| Prevotella.Otu1987 | patient FALSE . | 3 | 4.009e-02 | 9.820e-02 | 0.000e+00 | 0.1667 |
| Prevotella.Otu1987 | patient FALSE . | 4 | 1.542e-05 | 3.776e-05 | 0.000e+00 | 0.1667 |
| Prevotella.Otu1987 | patient TRUE . | 1 | 1.090e-02 | 2.911e-02 | 0.000e+00 | 0.1538 |
| Prevotella.Otu1987 | patient TRUE . | 2 | 1.933e-02 | 5.966e-02 | 1.932e-05 | 0.5000 |
| Prevotella.Otu1987 | patient TRUE . | 3 | 2.731e-03 | 7.630e-03 | 0.000e+00 | 0.2500 |
| Prevotella.Otu1987 | patient TRUE . | 4 | 6.413e-05 | 1.136e-04 | 0.000e+00 | 0.4286 |
| Bacteroides.Otu0848 | 1 | 1 | 1.065e-02 | 2.194e-02 | 1.240e-03 | 0.6667 |
| Bacteroides.Otu0848 | 1 | 2 | 4.248e-03 | 6.007e-03 | 4.248e-03 | 0.5000 |
| Bacteroides.Otu0848 | patient FALSE . | 1 | 1.707e-02 | 3.960e-02 | 5.907e-03 | 0.9000 |
| Bacteroides.Otu0848 | patient FALSE . | 2 | 6.903e-03 | 9.725e-03 | 2.057e-03 | 0.8571 |
| Bacteroides.Otu0848 | patient FALSE . | 3 | 9.123e-02 | 1.945e-01 | 1.966e-04 | 0.5000 |
| Bacteroides.Otu0848 | patient FALSE . | 4 | 1.501e-02 | 3.540e-02 | 6.597e-04 | 0.8333 |
| Bacteroides.Otu0848 | patient TRUE . | 1 | 2.671e-02 | 3.193e-02 | 1.120e-02 | 0.8462 |
| Bacteroides.Otu0848 | patient TRUE . | 2 | 2.030e-02 | 2.948e-02 | 2.863e-03 | 0.7000 |
| Bacteroides.Otu0848 | patient TRUE . | 3 | 6.052e-02 | 8.697e-02 | 1.592e-02 | 0.7500 |
| Bacteroides.Otu0848 | patient TRUE . | 4 | 4.907e-02 | 7.147e-02 | 2.948e-02 | 0.8571 |
| Bacteroides.Otu2038 | 1 | 1 | 1.297e-02 | 3.185e-02 | 2.747e-03 | 0.7778 |
| Bacteroides.Otu2038 | 1 | 2 | 2.898e-03 | 2.382e-03 | 2.898e-03 | 1.0000 |
| Bacteroides.Otu2038 | patient FALSE . | 1 | 3.474e-02 | 8.766e-02 | 2.137e-03 | 0.9000 |
| Bacteroides.Otu2038 | patient FALSE . | 2 | 6.335e-03 | 1.328e-02 | 4.859e-04 | 0.7143 |
| Bacteroides.Otu2038 | patient FALSE . | 3 | 5.785e-02 | 1.371e-01 | 2.261e-03 | 0.5000 |
| Bacteroides.Otu2038 | patient FALSE . | 4 | 7.519e-02 | 1.129e-01 | 2.006e-02 | 0.5000 |
| Bacteroides.Otu2038 | patient TRUE . | 1 | 1.968e-02 | 4.234e-02 | 6.590e-03 | 0.8462 |
| Bacteroides.Otu2038 | patient TRUE . | 2 | 2.811e-02 | 5.453e-02 | 7.947e-03 | 0.8000 |
| Bacteroides.Otu2038 | patient TRUE . | 3 | 8.787e-03 | 9.306e-03 | 7.237e-03 | 0.7500 |
| Bacteroides.Otu2038 | patient TRUE . | 4 | 1.065e-02 | 1.773e-02 | 1.341e-03 | 0.8571 |
| Parabacteroides.Otu1736 | 1 | 1 | 4.727e-03 | 5.893e-03 | 3.900e-03 | 0.8333 |
| Parabacteroides.Otu1736 | 1 | 2 | 8.764e-03 | 5.913e-03 | 8.764e-03 | 1.0000 |
| Parabacteroides.Otu1736 | patient FALSE . | 1 | 3.866e-03 | 6.134e-03 | 1.455e-04 | 0.6000 |
| Parabacteroides.Otu1736 | patient FALSE . | 2 | 1.770e-02 | 4.604e-02 | 4.893e-04 | 0.5714 |
| Parabacteroides.Otu1736 | patient FALSE . | 3 | 7.007e-03 | 1.493e-02 | 0.000e+00 | 0.3333 |
| Parabacteroides.Otu1736 | patient FALSE . | 4 | 6.321e-04 | 1.017e-03 | 0.000e+00 | 0.3333 |
| Parabacteroides.Otu1736 | patient TRUE . | 1 | 4.142e-02 | 1.317e-01 | 1.328e-04 | 0.5385 |
| Parabacteroides.Otu1736 | patient TRUE . | 2 | 7.001e-02 | 2.108e-01 | 0.000e+00 | 0.4000 |
| Parabacteroides.Otu1736 | patient TRUE . | 3 | 3.964e-02 | 6.146e-02 | 6.241e-03 | 0.6250 |
| Parabacteroides.Otu1736 | patient TRUE . | 4 | 1.770e-03 | 3.510e-03 | 0.000e+00 | 0.4286 |
| Bacteroides.Otu2654 | 1 | 1 | 5.269e-03 | 8.442e-03 | 5.437e-04 | 0.7222 |
| Bacteroides.Otu2654 | 1 | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Bacteroides.Otu2654 | patient FALSE . | 1 | 7.257e-02 | 1.423e-01 | 2.235e-03 | 0.7000 |
| Bacteroides.Otu2654 | patient FALSE . | 2 | 1.413e-03 | 1.664e-03 | 8.251e-04 | 0.7143 |
| Bacteroides.Otu2654 | patient FALSE . | 3 | 1.527e-03 | 2.490e-03 | 2.610e-04 | 0.6667 |
| Bacteroides.Otu2654 | patient FALSE . | 4 | 3.480e-03 | 7.820e-03 | 3.116e-04 | 0.5000 |
| Bacteroides.Otu2654 | patient TRUE . | 1 | 2.880e-02 | 3.291e-02 | 1.159e-02 | 0.8462 |
| Bacteroides.Otu2654 | patient TRUE . | 2 | 9.244e-03 | 1.863e-02 | 1.462e-03 | 0.6000 |
| Bacteroides.Otu2654 | patient TRUE . | 3 | 1.201e-02 | 2.697e-02 | 4.610e-04 | 0.7500 |
| Bacteroides.Otu2654 | patient TRUE . | 4 | 1.339e-02 | 1.949e-02 | 4.248e-03 | 1.0000 |
| Bacteroides.Otu2065 | 1 | 1 | 7.046e-03 | 1.378e-02 | 0.000e+00 | 0.3333 |
| Bacteroides.Otu2065 | 1 | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Bacteroides.Otu2065 | patient FALSE . | 1 | 2.137e-04 | 5.675e-04 | 0.000e+00 | 0.2000 |
| Bacteroides.Otu2065 | patient FALSE . | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Bacteroides.Otu2065 | patient FALSE . | 3 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Bacteroides.Otu2065 | patient FALSE . | 4 | 1.135e-02 | 2.779e-02 | 0.000e+00 | 0.1667 |
| Bacteroides.Otu2065 | patient TRUE . | 1 | 3.720e-02 | 1.082e-01 | 0.000e+00 | 0.2308 |
| Bacteroides.Otu2065 | patient TRUE . | 2 | 1.184e-02 | 3.571e-02 | 0.000e+00 | 0.4000 |
| Bacteroides.Otu2065 | patient TRUE . | 3 | 6.869e-02 | 1.851e-01 | 0.000e+00 | 0.3750 |
| Bacteroides.Otu2065 | patient TRUE . | 4 | 2.219e-02 | 3.637e-02 | 1.625e-04 | 0.5714 |
| Bacteroides.Otu0863 | 1 | 1 | 7.645e-03 | 8.815e-03 | 6.083e-03 | 0.7778 |
| Bacteroides.Otu0863 | 1 | 2 | 6.250e-02 | 8.839e-02 | 6.250e-02 | 0.5000 |
| Bacteroides.Otu0863 | patient FALSE . | 1 | 4.444e-02 | 7.340e-02 | 2.085e-02 | 0.9000 |
| Bacteroides.Otu0863 | patient FALSE . | 2 | 5.955e-03 | 1.395e-02 | 5.036e-04 | 0.7143 |
| Bacteroides.Otu0863 | patient FALSE . | 3 | 2.915e-03 | 4.516e-03 | 0.000e+00 | 0.3333 |
| Bacteroides.Otu0863 | patient FALSE . | 4 | 2.470e-03 | 5.525e-03 | 0.000e+00 | 0.3333 |
| Bacteroides.Otu0863 | patient TRUE . | 1 | 2.294e-02 | 4.344e-02 | 3.300e-03 | 0.8462 |
| Bacteroides.Otu0863 | patient TRUE . | 2 | 1.605e-02 | 4.328e-02 | 1.028e-04 | 0.5000 |
| Bacteroides.Otu0863 | patient TRUE . | 3 | 6.975e-03 | 9.227e-03 | 3.995e-03 | 0.7500 |
| Bacteroides.Otu0863 | patient TRUE . | 4 | 2.140e-02 | 3.827e-02 | 4.546e-03 | 0.8571 |
| Bacteroides.Otu2431 | 1 | 1 | 1.752e-02 | 2.195e-02 | 6.948e-03 | 0.7222 |
| Bacteroides.Otu2431 | 1 | 2 | 1.133e-02 | 1.602e-02 | 1.133e-02 | 0.5000 |
| Bacteroides.Otu2431 | patient FALSE . | 1 | 1.081e-02 | 1.187e-02 | 4.203e-03 | 0.8000 |
| Bacteroides.Otu2431 | patient FALSE . | 2 | 1.465e-02 | 2.101e-02 | 6.715e-04 | 0.7143 |
| Bacteroides.Otu2431 | patient FALSE . | 3 | 1.118e-03 | 2.044e-03 | 4.916e-05 | 0.5000 |
| Bacteroides.Otu2431 | patient FALSE . | 4 | 3.160e-02 | 4.926e-02 | 4.451e-03 | 0.6667 |
| Bacteroides.Otu2431 | patient TRUE . | 1 | 1.916e-02 | 2.943e-02 | 1.437e-02 | 0.8462 |
| Bacteroides.Otu2431 | patient TRUE . | 2 | 1.612e-02 | 1.948e-02 | 8.648e-03 | 0.8000 |
| Bacteroides.Otu2431 | patient TRUE . | 3 | 1.666e-02 | 1.369e-02 | 1.653e-02 | 1.0000 |
| Bacteroides.Otu2431 | patient TRUE . | 4 | 2.214e-02 | 2.310e-02 | 1.294e-02 | 0.8571 |
| Bacteroides.Otu0929 | 1 | 1 | 7.901e-03 | 9.570e-03 | 4.583e-03 | 0.8333 |
| Bacteroides.Otu0929 | 1 | 2 | 1.136e-03 | 6.813e-04 | 1.136e-03 | 1.0000 |
| Bacteroides.Otu0929 | patient FALSE . | 1 | 1.419e-02 | 2.249e-02 | 3.571e-03 | 0.7000 |
| Bacteroides.Otu0929 | patient FALSE . | 2 | 5.678e-03 | 6.433e-03 | 4.197e-03 | 0.5714 |
| Bacteroides.Otu0929 | patient FALSE . | 3 | 2.064e-03 | 4.875e-03 | 0.000e+00 | 0.3333 |
| Bacteroides.Otu0929 | patient FALSE . | 4 | 6.298e-03 | 9.798e-03 | 0.000e+00 | 0.3333 |
| Bacteroides.Otu0929 | patient TRUE . | 1 | 2.972e-02 | 6.220e-02 | 3.724e-03 | 0.7692 |
| Bacteroides.Otu0929 | patient TRUE . | 2 | 2.250e-02 | 2.533e-02 | 1.586e-02 | 0.8000 |
| Bacteroides.Otu0929 | patient TRUE . | 3 | 2.530e-02 | 2.588e-02 | 2.134e-02 | 0.8750 |
| Bacteroides.Otu0929 | patient TRUE . | 4 | 1.556e-02 | 1.545e-02 | 1.297e-02 | 0.8571 |
| Bacteroides.Otu1201 | 1 | 1 | 3.699e-03 | 4.973e-03 | 2.154e-03 | 0.7222 |
| Bacteroides.Otu1201 | 1 | 2 | 2.104e-02 | 2.975e-02 | 2.104e-02 | 0.5000 |
| Bacteroides.Otu1201 | patient FALSE . | 1 | 9.266e-03 | 1.027e-02 | 6.962e-03 | 0.9000 |
| Bacteroides.Otu1201 | patient FALSE . | 2 | 1.400e-03 | 2.361e-03 | 0.000e+00 | 0.4286 |
| Bacteroides.Otu1201 | patient FALSE . | 3 | 1.982e-05 | 4.855e-05 | 0.000e+00 | 0.1667 |
| Bacteroides.Otu1201 | patient FALSE . | 4 | 2.775e-04 | 6.797e-04 | 0.000e+00 | 0.1667 |
| Bacteroides.Otu1201 | patient TRUE . | 1 | 2.465e-02 | 5.589e-02 | 4.831e-03 | 0.7692 |
| Bacteroides.Otu1201 | patient TRUE . | 2 | 4.627e-03 | 6.232e-03 | 1.186e-03 | 0.8000 |
| Bacteroides.Otu1201 | patient TRUE . | 3 | 1.252e-02 | 2.175e-02 | 1.190e-03 | 0.6250 |
| Bacteroides.Otu1201 | patient TRUE . | 4 | 6.109e-02 | 1.443e-01 | 4.281e-04 | 0.7143 |
| Bacteroides.Otu0786 | 1 | 1 | 1.213e-03 | 2.598e-03 | 0.000e+00 | 0.3333 |
| Bacteroides.Otu0786 | 1 | 2 | 1.618e-03 | 2.288e-03 | 1.618e-03 | 0.5000 |
| Bacteroides.Otu0786 | patient FALSE . | 1 | 3.901e-03 | 7.552e-03 | 6.537e-04 | 0.5000 |
| Bacteroides.Otu0786 | patient FALSE . | 2 | 5.539e-02 | 1.216e-01 | 8.663e-03 | 0.7143 |
| Bacteroides.Otu0786 | patient FALSE . | 3 | 1.427e-02 | 3.351e-02 | 0.000e+00 | 0.3333 |
| Bacteroides.Otu0786 | patient FALSE . | 4 | 4.070e-03 | 9.969e-03 | 0.000e+00 | 0.1667 |
| Bacteroides.Otu0786 | patient TRUE . | 1 | 2.109e-02 | 6.921e-02 | 0.000e+00 | 0.4615 |
| Bacteroides.Otu0786 | patient TRUE . | 2 | 3.762e-03 | 9.941e-03 | 0.000e+00 | 0.3000 |
| Bacteroides.Otu0786 | patient TRUE . | 3 | 9.254e-03 | 1.752e-02 | 0.000e+00 | 0.3750 |
| Bacteroides.Otu0786 | patient TRUE . | 4 | 2.042e-02 | 4.935e-02 | 0.000e+00 | 0.4286 |
| Alistipes.Otu2508 | 1 | 1 | 1.852e-02 | 2.951e-02 | 4.785e-03 | 0.6667 |
| Alistipes.Otu2508 | 1 | 2 | 5.057e-02 | 7.151e-02 | 5.057e-02 | 0.5000 |
| Alistipes.Otu2508 | patient FALSE . | 1 | 2.934e-02 | 6.749e-02 | 1.338e-03 | 0.5000 |
| Alistipes.Otu2508 | patient FALSE . | 2 | 1.036e-02 | 1.801e-02 | 0.000e+00 | 0.2857 |
| Alistipes.Otu2508 | patient FALSE . | 3 | 8.739e-04 | 2.141e-03 | 0.000e+00 | 0.1667 |
| Alistipes.Otu2508 | patient FALSE . | 4 | 3.251e-03 | 7.923e-03 | 0.000e+00 | 0.3333 |
| Alistipes.Otu2508 | patient TRUE . | 1 | 8.815e-03 | 1.571e-02 | 5.195e-04 | 0.5385 |
| Alistipes.Otu2508 | patient TRUE . | 2 | 4.655e-03 | 6.600e-03 | 0.000e+00 | 0.4000 |
| Alistipes.Otu2508 | patient TRUE . | 3 | 6.563e-03 | 1.417e-02 | 5.301e-05 | 0.5000 |
| Alistipes.Otu2508 | patient TRUE . | 4 | 6.108e-03 | 1.163e-02 | 0.000e+00 | 0.4286 |
| Bacteroides.Otu2625 | 1 | 1 | 6.692e-03 | 1.678e-02 | 6.631e-04 | 0.6667 |
| Bacteroides.Otu2625 | 1 | 2 | 4.248e-03 | 6.007e-03 | 4.248e-03 | 0.5000 |
| Bacteroides.Otu2625 | patient FALSE . | 1 | 1.130e-02 | 3.301e-02 | 3.196e-04 | 0.6000 |
| Bacteroides.Otu2625 | patient FALSE . | 2 | 4.114e-03 | 1.088e-02 | 0.000e+00 | 0.1429 |
| Bacteroides.Otu2625 | patient FALSE . | 3 | 1.035e-03 | 1.676e-03 | 1.189e-04 | 0.5000 |
| Bacteroides.Otu2625 | patient FALSE . | 4 | 1.065e-02 | 2.457e-02 | 0.000e+00 | 0.3333 |
| Bacteroides.Otu2625 | patient TRUE . | 1 | 2.583e-02 | 5.292e-02 | 1.212e-03 | 0.6923 |
| Bacteroides.Otu2625 | patient TRUE . | 2 | 7.327e-03 | 1.297e-02 | 1.092e-03 | 0.7000 |
| Bacteroides.Otu2625 | patient TRUE . | 3 | 3.090e-02 | 8.438e-02 | 0.000e+00 | 0.3750 |
| Bacteroides.Otu2625 | patient TRUE . | 4 | 2.022e-03 | 3.918e-03 | 3.058e-05 | 0.5714 |
| Lactobacillus.Otu1332 | 1 | 1 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Lactobacillus.Otu1332 | 1 | 2 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Lactobacillus.Otu1332 | patient FALSE . | 1 | 1.529e-04 | 2.881e-04 | 0.000e+00 | 0.3000 |
| Lactobacillus.Otu1332 | patient FALSE . | 2 | 1.424e-01 | 3.769e-01 | 0.000e+00 | 0.1429 |
| Lactobacillus.Otu1332 | patient FALSE . | 3 | 8.800e-04 | 1.909e-03 | 0.000e+00 | 0.3333 |
| Lactobacillus.Otu1332 | patient FALSE . | 4 | 5.364e-05 | 1.314e-04 | 0.000e+00 | 0.1667 |
| Lactobacillus.Otu1332 | patient TRUE . | 1 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Lactobacillus.Otu1332 | patient TRUE . | 2 | 5.567e-06 | 1.761e-05 | 0.000e+00 | 0.1000 |
| Lactobacillus.Otu1332 | patient TRUE . | 3 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Lactobacillus.Otu1332 | patient TRUE . | 4 | 0.000e+00 | 0.000e+00 | 0.000e+00 | 0.0000 |
| Blautia.Otu2475 | 1 | 1 | 1.814e-02 | 4.375e-02 | 7.955e-03 | 1.0000 |
| Blautia.Otu2475 | 1 | 2 | 1.313e-02 | 1.800e-02 | 1.313e-02 | 1.0000 |
| Blautia.Otu2475 | patient FALSE . | 1 | 9.586e-03 | 1.290e-02 | 3.590e-03 | 1.0000 |
| Blautia.Otu2475 | patient FALSE . | 2 | 6.603e-03 | 1.016e-02 | 1.664e-03 | 0.8571 |
| Blautia.Otu2475 | patient FALSE . | 3 | 2.577e-02 | 2.399e-02 | 2.091e-02 | 1.0000 |
| Blautia.Otu2475 | patient FALSE . | 4 | 8.660e-03 | 8.216e-03 | 4.604e-03 | 1.0000 |
| Blautia.Otu2475 | patient TRUE . | 1 | 4.266e-03 | 5.462e-03 | 1.372e-03 | 0.8462 |
| Blautia.Otu2475 | patient TRUE . | 2 | 9.397e-03 | 1.485e-02 | 4.721e-03 | 0.8000 |
| Blautia.Otu2475 | patient TRUE . | 3 | 9.117e-03 | 1.032e-02 | 6.525e-03 | 1.0000 |
| Blautia.Otu2475 | patient TRUE . | 4 | 1.130e-02 | 1.660e-02 | 3.353e-03 | 1.0000 |
| Clostridium_XI.Otu1804 | 1 | 1 | 8.144e-03 | 1.014e-02 | 5.866e-03 | 0.9444 |
| Clostridium_XI.Otu1804 | 1 | 2 | 9.628e-03 | 6.752e-03 | 9.628e-03 | 1.0000 |
| Clostridium_XI.Otu1804 | patient FALSE . | 1 | 2.111e-02 | 3.509e-02 | 3.397e-03 | 0.9000 |
| Clostridium_XI.Otu1804 | patient FALSE . | 2 | 3.633e-03 | 5.261e-03 | 2.854e-03 | 0.5714 |
| Clostridium_XI.Otu1804 | patient FALSE . | 3 | 3.741e-03 | 4.719e-03 | 2.250e-03 | 0.8333 |
| Clostridium_XI.Otu1804 | patient FALSE . | 4 | 2.675e-02 | 4.629e-02 | 7.207e-03 | 1.0000 |
| Clostridium_XI.Otu1804 | patient TRUE . | 1 | 4.942e-03 | 1.055e-02 | 1.655e-03 | 0.7692 |
| Clostridium_XI.Otu1804 | patient TRUE . | 2 | 1.619e-02 | 4.365e-02 | 9.337e-04 | 0.9000 |
| Clostridium_XI.Otu1804 | patient TRUE . | 3 | 7.790e-03 | 1.040e-02 | 1.934e-03 | 1.0000 |
| Clostridium_XI.Otu1804 | patient TRUE . | 4 | 1.497e-02 | 1.884e-02 | 4.832e-03 | 1.0000 |
| Bacteroides.Otu0069 | 1 | 1 | 6.746e-03 | 6.781e-03 | 4.877e-03 | 0.7778 |
| Bacteroides.Otu0069 | 1 | 2 | 6.721e-03 | 2.068e-03 | 6.721e-03 | 1.0000 |
| Bacteroides.Otu0069 | patient FALSE . | 1 | 6.064e-03 | 6.818e-03 | 3.453e-03 | 0.8000 |
| Bacteroides.Otu0069 | patient FALSE . | 2 | 2.499e-03 | 2.575e-03 | 2.879e-03 | 0.7143 |
| Bacteroides.Otu0069 | patient FALSE . | 3 | 9.949e-04 | 1.568e-03 | 3.745e-04 | 0.5000 |
| Bacteroides.Otu0069 | patient FALSE . | 4 | 3.397e-03 | 7.176e-03 | 3.250e-04 | 0.5000 |
| Bacteroides.Otu0069 | patient TRUE . | 1 | 2.030e-02 | 1.993e-02 | 1.628e-02 | 0.8462 |
| Bacteroides.Otu0069 | patient TRUE . | 2 | 2.071e-02 | 1.572e-02 | 2.446e-02 | 0.8000 |
| Bacteroides.Otu0069 | patient TRUE . | 3 | 1.868e-02 | 1.841e-02 | 1.250e-02 | 0.7500 |
| Bacteroides.Otu0069 | patient TRUE . | 4 | 1.377e-02 | 1.356e-02 | 1.364e-02 | 0.8571 |
(1.1.1.4.3.2.4.2.1.1.1) Figure 207. Abundance. Data grouped by Sample.type.Drug.Before,visit. bar_stacked plot. Image file: plots/32350ea69d9.svg. 
(1.1.1.4.3.2.4.2.1.1.1) Figure 208. Abundance. Data grouped by Sample.type.Drug.Before,visit. bar (sample mean) plot. Image file: plots/323166766bc.svg. 
(1.1.1.4.3.2.4.2.1.1.1) Figure 209. Abundance. Data grouped by Sample.type.Drug.Before,visit. violin plot. Image file: plots/323c1fa290.svg. 
(1.1.1.4.3.2.4.2.1.1.1) Figure 210. Abundance. Data grouped by Sample.type.Drug.Before,visit. boxplot plot. Image file: plots/32370fa40a8.svg. 
(1.1.1.4.3.2.4.2.1.2.1) Figure 211. Abundance. Data grouped by Sample.type.Drug.Before,visit. bar (sample mean) plot. Image file: plots/3234568e917.svg. 
(1.1.1.4.3.2.4.2.1.2.1) Figure 212. Abundance. Data grouped by Sample.type.Drug.Before,visit. violin plot. Image file: plots/3235f856975.svg. 
(1.1.1.4.3.2.4.2.1.2.1) Figure 213. Abundance. Data grouped by Sample.type.Drug.Before,visit. boxplot plot. Image file: plots/3234a33976c.svg. 
